Kerry, This is not going to be an easy one to answer. Hopefully someone can give better advice than me.
I had the luxury of labeling all my wires on disassembly taking all the guess work out of what goes where when going back together. It would be great if you can get assistance from someone close by who has good electrical trouble shooting ability.
The bolt in the center of the bulkhead connector will release it and the connectors kind of slides together to make one large connector. I would think there are numbers on the connector that you can correlate to your wiring diagram, but really don't know. There is a group of about three wires that comes from the alternator and some are spliced into a fusible link. The heaviest gage wire connects to stud on the back of the alternator. There is a two-wire connector that plugs into the alternator Other than the starter motor this is what provides power to everything in the car. If this wiring is in poor shape, you could have some flaky problems. If the insulation is hard or cracked this could short out and you would lose power to everything.
You might want to consider replacing the engine wiring harness, it should be available from multiple sources. If the wires are labeled it will be easier to figure out what the wires connect to.
I don't know if the plastic bulkhead connector is part of the harness or not. This is where it would be great to talk to someone who has already replaced the harness.
The second photo from the top shows how the bulkhead connector comes apart.
http://www.firebirdtransamparts.com/techinfo/harness/harness.htmSorry I can't be of more help.