You wouldn't believe all the weird stuff I've gotten out of cars through (or with the help of) those holes over the years. Stuff slides over the edge between the trunk pan and quarter panel and drops down in there. I used to find beer bottle caps, roach clips, hair barrettes, scissors, wrenches, twine, and other stuff.
I need plugs for my 67 Camaro I replaced all the lower trunk area sheet meal in.